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Spaced k-mer and assembler methods
['Ragnar', 'Groot Koerkamp']
home on CuriousCoding
Map a sequence onto a reference genome/dataset Assembly Build a genome from a set of reads de novo (implied): without using a reference genome Otherwise just called mapping OLC: Overlap-Layout-Concensus build overlap graph extract sequence make consensus to reduce error rate from reads bulge/tip removal heuristic: clean up small components of the overlap graph Spaced seeds improve \(k\)-mer-based metagenomic classification Link to heading