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FM-index implementations
['Ragnar', 'Groot Koerkamp']
home on CuriousCoding
Implementations seem relatively inconsistent, mostly because the FM-index is more of a ‘wrapper’ type around a given Burrows-Wheeler-transform and an occurrences list implementation. SDSL-lite contains a wavelet tree and compressed suffix array implementation based on it, that provides the same functionality as an FM-index. This uses a 4-ary tree instead of the usual binary wavelet tree, and improves latency by around a factor 2 over SDSL wavelet trees.