Salmonella outbreak linked to jalapeños served at Chipotle expands to Qdoba: FDABoth restaurants have removed the jalapenos from their stores, the FDA said. Health officials are expanding an investigation into jalapenos served at Chipotle restaurants to include Qdoba restaurants. Both restaurants have removed the jalapeños from their stores, the FDA said. "Out of an abundance of caution, we have proactively removed jalapeños from all our restaurants at this time," the restaurant chain said. The FDA said it does not consider there to be an ongoing risk from eating at Qdoba or Chipotle restaurants.