The Brief Chipotle has announced it is pulling jalapeños from its store after a salmonella outbreak in food supply chains in Minnesota. Chipotle officials say the Minnesota Department of Health has confirmed it has no concerns with Chipotle, but FOX has reached out to the department to confirm. Chipotle is pulling jalapeños from its store after a salmonella outbreak in Minnesota. Minnesota salmonella outbreakWhat we know:Chipotle issued a statement saying that the Minnesota Department of Health (MDH) is investigating a salmonella outbreak in the food supply chain, which is affecting "several food service retailers in Minnesota." Carlota Medus, Senior Epidemiologist Supervisor in the Minnesota Department of Health Foodborne Diseases Unit, says MDH is investigating a salmonella outbreak that is associated with Mexican-style quick-service restaurants.